CESSHIV-1 database

General information on HIV-1 isolate

# 3850

Accession number	HM583610
Name	Vin5
Subtype	A1
Country	Ukraine
Sampling year	2009

HM583610 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatc-gagc ctgggagctc tctggctagc tagggaaccc actgcttaag cctcaataaa gcttgccttg agtgctttaa gtagtgtgtg cccgtctgtt gtgtgactct ggtaa

Isolates with identical sequences of region:

EU938122(#2318) EU938123(#2319) HM583624(#3864)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy