CESSHIV-1 database

General information on HIV-1 isolate

# 15

Accession number	M38429
Name	JRCSF
Subtype	B
Country	USA
Sampling year	1986
Patient	JR

M38429 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB287366(#932) AB287367(#933) AB287371(#937) AB480694(#2719) AB480695(#2720) AF042101(#123) AF196708(#1279) AF196714(#1285) AF538304(#1077) AF538307(#1080) AM851091(#1081) AY851681(#2102) D86069(#1095) DQ287287(#2988) DQ295195(#572) EF370317(#1763) EF370353(#3014) EF370387(#1803) EU047618(#1820) EU047622(#1824) EU047656(#1859) EU047682(#1878) EU047683(#1879) EU047684(#1880) EU047694(#1889) EU047696(#2275) EU047700(#1891) GU595150(#3291) GU733713(#3313) GU733714(#3319) GU733715(#3320) GU733716(#3321) GU733717(#3322) U12055(#11) U21135(#29) U73099(#2524) U80520(#2539) U80525(#2544) U80527(#2546) U80539(#2558) U81454(#2559) U81467(#2572) U81468(#2573) U81477(#2582)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy