CESSHIV-1 database

General information on HIV-1 isolate

# 2581

Accession number	U81476
Name	VE23ANEF
Subtype	B
Country	Venezuela
Sampling year	1994
Patient	23

U81476 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagagcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy