CESSHIV-1 database

General information on HIV-1 isolate

# 124

Accession number	AB052867
Name	97GH_AG2
Subtype	02A1
Country	Ghana
Sampling year	1997

AB052867 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctagccctca gatgctgcat ataagcagct gcttctcgcc tgtactgggt ctctcttgtt agaccagatt tgagcctggg agctctctgg ctagcgaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgta actctggtaa 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy