CESSHIV-1 database

General information on HIV-1 isolate

# 1218

Accession number	AB191665
Name	99ZM3294
Subtype	C
Country	Zambia
Sampling year	1999

AB191665 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ccagccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctaggc agaccagatc tgagcccggg agctctctgg ctgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tctaagtagt gtgtgcccgt ctgttgtgtg actctggtaa 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy