CESSHIV-1 database

General information on HIV-1 isolate

# 1244

Accession number	AB191666
Name	99ZM3606
Subtype	C
Country	Zambia
Sampling year	1999

AB191666 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ccagccctca gatgctgcat ataagcagct gcttctcgct tgtactgggt ctctcttggt agaccagatt tgagcctggg agctctctgg ctatcaggag aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttaaagtagt gtgtgcccgt ctgttgtgtg actctggtaa 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy