CESSHIV-1 database

General information on HIV-1 isolate

# 926

Accession number	AB287379
Name	p93RW037A92
Subtype	A1
Country	Rwanda
Sampling year	1993
Patient	037

AB287379 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccctcc gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctcttgct agaccagata -gagcctggga gctctctggc tagtgaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg tgtgcccgtc tgttgtatga ctctggtaa

Isolates with identical sequences of region:

AB287378(#925)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Complete poly(A) region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy