CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1280
Accession number AF196709
Name 97TH50
SubtypeB
CountryThailand
Sampling year 1997

AF196709 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgcatata agcagctg-tg ccttttgcct gtactgggtc tctctggtta gaccagatct gagcctggga gctctctggc tgagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttaaagtagt gtgtgcccgt ctgttgtgtg actctggtaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012