CESSHIV-1 database

General information on HIV-1 isolate

# 112

Accession number	AF321523
Name	chimeric_MJ4
Subtype	C
Country	Botswana
Sampling year	1996
Patient	96BW06

AF321523 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctaggt aggccagatc tgagcccggg agctctctgg ctatatgggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tataagtagt gtgtgcccat ctgttatatg gagtctggta a

Isolates with identical sequences of region:

AF290028(#90)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Complete poly(A) region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy