CESSHIV-1 database

General information on HIV-1 isolate

# 109

Accession number	AJ288982
Name	95ML127
Subtype	CRF06_cpx
Country	Mali
Sampling year	1995

AJ288982 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccctaa actgctgcat aaaagcagcc gcttctcgct tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcagggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttacagtagt gtgtgcccgt ctgttgtgtg actctggtaa 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy