CESSHIV-1 database

General information on HIV-1 isolate

# 2052

Accession number	AY610991
Name	03SP123900
Subtype	B
Country	Spain (France)
Sampling year	2003

AY610991 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa 

Isolates with identical sequences of region:

AB221005(#685) AB253432(#914) AF003888(#1197) AF004394(#22) D86068(#1094) DQ672623(#1433) EF363124(#966) K02083(#70) L31963(#2368) U80521(#2540) U80530(#2549) U80534(#2553) U81465(#2570) U81470(#2575)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Complete poly(A) region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy