CESSHIV-1 database

General information on HIV-1 isolate

# 2978

Accession number	DQ287275
Name	D36_1_1999
Subtype	B
Country	Australia
Sampling year	1999
Patient	D36

DQ287275 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt ggaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa 

Isolates with identical sequences of region:

DQ287273(#2976) DQ287277(#2824) DQ287278(#2980) DQ287279(#3140) DQ287281(#2982) DQ287282(#2983) DQ287284(#2985)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Complete poly(A) region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy