CESSHIV-1 database

General information on HIV-1 isolate

# 3306

Accession number	DQ287294
Name	C54_3_2000
Subtype	B
Country	Australia
Sampling year	2000
Patient	C54

DQ287294 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa 

Isolates with identical sequences of region:

DQ287288(#3474) DQ287289(#3293) DQ287290(#3302) DQ287291(#3303) DQ287292(#3304) DQ287293(#3305) DQ287306(#3001) DQ287310(#2993) EF370172(#2226) EF370173(#2227) EF370176(#1451) EF370180(#1454) EF370181(#1455) EF370211(#2233) EF370294(#2256) EU047600(#2270) EU047603(#1623) EU047606(#1600) EU047610(#1813) EU047611(#1814) EU047612(#1815) EU047693(#1888)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Complete poly(A) region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy