CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2395
Accession number FJ614976
Name 91KJK10_4176s
SubtypeCRF02_AG
CountrySouth Korea (Africa)
Sampling year 1991
PatientKJK

FJ614976 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccgtca aaggctgcat gtaagcagca gctgctcgcc tgtactgggt ctctctggta ataccagatt ggagcctggg agctctctgg gtagcaggag aacccactgc ttaagcctca ataagacttg cctggagtgc ttcaagtaga gggtgcccgt ctgttgtggg actctggtaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy