CESSHIV-1 database

General information on HIV-1 isolate

# 3343

Accession number	GU391335
Name	6R
Subtype
Country	India
Submitted to NCBI	2010

GU391335 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg -----------------------------------cctcaataca gcttgccttg agtgctcaaa gtagtgtgtg cccgtctgtt gtgtgactct ggtaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy