CESSHIV-1 database

General information on HIV-1 isolate

# 3878

Accession number	HM583638
Name	Vin48
Subtype	A1
Country	Ukraine
Sampling year	2009

HM583638 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccctca gaagctgcat ataagcagct gcttttcgcc tgtactgggt ctctttggtt agaccagat-t gagcctggga gctctctggc tagctaggga acccactgct taagcctcaa taaagcttgc cttgagtgct ttaagtagtg tgtgcccgtc tgttgtttga ctctggtaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy