CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 5010
Accession number PBS-03RU951
Name 03RU951-PBS-(EU938118/FJ437017)
Subtype
Country
Submitted to NCBI

PBS-03RU951 isolate has foldings of [PBS region] [Complete poly(A) region] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccctca gatgctgctt ataagcagct gcttttcgcc tgt-ctgggtc tctctggtta gaccagatc-g agcctgggag ctctctggct agctagggaa cccactgctt aagcctcaat aaagcttgcc ttgagtgctt taagtagtgt gtgcccgtct gttgtatgac tctggtaa

Isolates with identical sequences of region:

EU938118(#2314)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012