CESSHIV-1 database

General information on HIV-1 isolate

# 2495

Accession number	U24478
Name	p3799_5
Subtype	B
Country	USA
Sampling year	1993
Patient	3799

U24478 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatcctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa 

Isolates with identical sequences of region:

AX316202(#1083) AX772015(#1086) BD410064(#1089) CS793683(#3475) CS793684(#1093) DM461230(#3476) DM461231(#3477) FB341548(#1902) FB707281(#1903) HH978650(#3848) K03455(#1182) L28908(#2476) U24466(#2380) U24467(#2381) U24468(#2488) U24469(#2489) U24471(#2491) U24472(#2492) U24473(#2493) U24479(#2496) U24480(#2497) X01762(#64)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy