CESSHIV-1 database

General information on HIV-1 isolate

# 2520

Accession number	U67769
Name	TW392
Subtype	B
Country	Taiwan
Submitted to NCBI	1996

U67769 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccctca gatgctgcat aaaagcagct gctttttgct tgtactgggt ctctctggtt agaccaggtc tgagcccggg agctctctgg ctagcaaggg aacccactgc ttaaagcctc aataaagctt gccttgagtg cttaaagtgg tgtgtgcccg tctgtgttag gactctggta a

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy