CESSHIV-1 database

General information on HIV-1 isolate

# 1217

Accession number	AB191663
Name	99ZM3289
Subtype	C
Country	Zambia
Sampling year	1999

AB191663 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cga---------tgctgca tataagcagc tgctttgcgc ctgtactggg tctctctagg tagaccagat ctgagcccgg gagctctctg gctatctggg gaacccactg cttaagcctc aataaagctt gccttgagtg ctctaagtag tgtgtgcccg tctgttgtgt gactctggta tctagagatc cctcagacct ttttggt-agt gtggaaaatc tctagca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy