CESSHIV-1 database

General information on HIV-1 isolate

# 1360

Accession number	AB191670
Name	99ZM5155
Subtype	C
Country	Zambia
Sampling year	1999

AB191670 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

tcaaccctca aatgctgcat ataaacagct gctttgggcc tggactaggt ctctcttagt aaaccagatt tgaacctagg agctctctgg ctatctcagg aaccccctgc ttaaacctca ataaagcttg ccttgaaaac tttaagtagt gtgtgcccat ctgttatgtg actctggtaa ctagagatcc ctcagaccct ttgtggtagt gtggaaaatc tctagca

Isolates with identical sequences of region:

AB191668(#1358)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy