CESSHIV-1 database

General information on HIV-1 isolate

# 805

Accession number	AB254142
Name	p02ZM110C07
Subtype	C
Country	Zambia
Sampling year	2002

AB254142 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

tcaaccctcc gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctgggt agaccagatc tgagcctggg agctctctgg ctatctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagacctt tgt-gttagtg tggaaaatct ctagca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy