CESSHIV-1 database

General information on HIV-1 isolate

# 928

Accession number	AB286956
Name	p04JPDR6089B56
Subtype	B
Country	Japan
Sampling year	2004
Patient	6089

AB286956 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaaagtag tgtgtgcccg tctgttgtgt gactctggta actagagatc cctcagacca tttaagtcag tgtggaaaat ctctagca

Isolates with identical sequences of region:

AB286955(#927)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy