CESSHIV-1 database

General information on HIV-1 isolate

# 2711

Accession number	AB480047
Name	AB480047
Subtype	02G
Country	Ghana
Sampling year	2003

AB480047 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gaagctgcat ataagcagcc gcttttcgcc tgttctgggt ctcttttgct agaccagatt tgagcctggg agctctctgg ctagtggagg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtttg actctggtaa ctagagatcc ctcagaccac tctagactgt gta-aaaatct ctagca

Isolates with identical sequences of region:

AB480048(#2712)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy