CESSHIV-1 database

General information on HIV-1 isolate

# 1936

Accession number	AF096655
Name	TZB0022
Subtype	A
Country	Tanzania
Sampling year	1996
Patient	22

AF096655 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gatgctgcat ataagcagcc gcttctcgcc tgtactgggt ctctcttgtt agaccagata -gagcctggga gctctctggc tagctaggga acccactgct taagcctcaa taaagcttgc cttgagtgac tcaagcagtg tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagactgtg ta-aaaatctc tagca

Isolates with identical sequences of region:

AF239658(#1980)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy