CESSHIV-1 database

General information on HIV-1 isolate

# 1285

Accession number	AF196714
Name	95SU86
Subtype	B
Country	Suriname
Sampling year	1995

AF196714 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccat tttagtcagt gtggaaaatc tctagca

Isolates with identical sequences of region:

GU733713(#3313) GU733714(#3319) GU733715(#3320) GU733716(#3321) GU733717(#3322) U21135(#29)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy