CESSHIV-1 database

General information on HIV-1 isolate

# 1304

Accession number	AF196737
Name	96ZR29
Subtype	U
Country	DRC
Sampling year	1996

AF196737 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctcgcttggt agaccagatc -gagcctggga gctctctggc tagctaggga acccactgct taagcctcaa taaagcttgc cttgagtgct ttaagtggtg tgtgcccatc tgttgtg--act ctggtaacta gagatccctc agaccaaatt agtcagtgag gaaaatctct agca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy