General information on HIV-1 isolate
# 1500
| Accession number |
AF254712 |
| Name | NT49_1 |
| Subtype | C |
| Country | Tanzania |
| Sampling year |
1996 |
| Patient | 49 |
AF254712 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .
The region encompassing 227 nt 3' terminusThe primary sequence:
ccaaccctca gatgctgcat ataagcagct gcttttcgca tgtactgggt ctctctaggt agacccgatc tgagcctggg agctctctgg ctatctagga aacccactgc ttaagcctca ataaagcttg ccttgagtgc taaaagtggt gtgtgcccgt cagttgtgtg actctggtaa ctagagatcc ctcagacacc ttttgtcagt gtggaaagtc tctagca
The optimal secondary structure:
The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy
