CESSHIV-1 database

General information on HIV-1 isolate

# 1515

Accession number	AF254728
Name	H1_3
Subtype	A
Country	Tanzania
Sampling year	1996
Patient	1

AF254728 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctagccctca gatgctgcat ataagcagct gctttgcgcc tgtactgggt ctctcttgtt agaccagatc -gagcctggga gctctctgga tagctagaga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagactgag ta-aaaatctc tagca

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy