CESSHIV-1 database

General information on HIV-1 isolate

# 967

Accession number	EF363125
Name	ES8-17
Subtype	B
Country	USA
Sampling year	2004
Patient	ES8

EF363125 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatt tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg cctttgagtg cttcaagtag tgtgtgcccg tctgttgtgt gactctggta actagagatc cctcagacca ttttagtcag tgtggaaaat ctctagca

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy