CESSHIV-1 database

General information on HIV-1 isolate

# 1759

Accession number	EF370311
Name	91KDG8_2714
Subtype	B
Country	South Korea
Sampling year	1991
Patient	KDG

EF370311 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccct tttagtcagt gtggaaaatc tctagca

Isolates with identical sequences of region:

EF370222(#1717) EF370226(#2238) EU047671(#2843)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy