CESSHIV-1 database

General information on HIV-1 isolate

# 973

Accession number	EF469243
Name	D24
Subtype	C
Country	India
Sampling year	2003
Patient	BL94

EF469243 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctaggt agaccagatc cgagcccggg agctctctgg ctatctgggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tctgagcagt gtgtgcccgt ctgttgtgtg actctggtat ctagagatcc ctcagaccct tttggt-agtg tggaaaatct ctagca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy