CESSHIV-1 database

General information on HIV-1 isolate

# 1829

Accession number	EU047627
Name	96HYH10_3319
Subtype	B Korean
Country	South Korea
Sampling year	1996
Patient	HYH

EU047627 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccat tttagtcagt gtggaaaatc tctagca

Isolates with identical sequences of region:

EF370242(#1719) EF370305(#1753) EU047626(#1828) EU047628(#1830) EU047629(#1831) EU047630(#1832) EU047634(#1833) EU047645(#1843)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy