General information on HIV-1 isolate
# 2309
| Accession number |
EU938113 |
| Name | 98RU340 |
| Subtype | A |
| Country | Russia |
| Sampling year |
1998 |
EU938113 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .
The region encompassing 227 nt 3' terminusThe primary sequence:
ctaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactaggt ctctctgggt agaccagatc -gagcctggga gctctctggc tagctaagga acccactgct taagcctcaa taaagcttgg cttgagtggt ttaagtagtg ggtgcccgtc tgttgtatga ctctggtaac tagagatccc tcagaccact ctaggcagtg ta-aaaatctc tagca
The optimal secondary structure:
The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy
