CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3279
Accession number GQ386791
Name K2p11
SubtypeB
CountrySpain
Sampling year 1989
Patient89ES061

GQ386791 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat ataagcagcc gctttt-gcct gtactgggtc tctcttgtta gaccagatct gagcctggga gctctctggc taactaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg tgtgcccgtc tattgtgtga ctctggtagc tagagatccc tcagaccctt ttagtcagtg tgaaaaatct ctagca

Isolates with identical sequences of region:

GQ386788(#3276) GQ386789(#3277) GQ386790(#3278)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012