CESSHIV-1 database

General information on HIV-1 isolate

# 3848

Accession number	HH978650
Name	HXB2_patent
Subtype	B
Country	USA
Submitted to NCBI	2006
Comments	Patent

HH978650 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatcctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccct tttagtcagt gtggaaaatc tctagca

Isolates with identical sequences of region:

AX316202(#1083) AX772015(#1086) BD410064(#1089) CS793683(#3475) CS793684(#1093) DM461230(#3476) DM461231(#3477) FB341548(#1902) FB707281(#1903) K03455(#1182) U24466(#2380) U24468(#2488) U24469(#2489) U24471(#2491) U24472(#2492) U24473(#2493) U24478(#2495) U24479(#2496) U24480(#2497) X01762(#64)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy