General information on HIV-1 isolate
# 3860
| Accession number |
HM583620 |
| Name | Vin21 |
| Subtype | A1 |
| Country | Ukraine |
| Sampling year |
2009 |
HM583620 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .
The region encompassing 227 nt 3' terminusThe primary sequence:
ctaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctggtt agaccagatc -gagcctggga gctctctggc tagctagg-aa cccactgctt aagcctcaat aaagcttgcc ttgagtgctt taagtagtgt gtgcccgtct gttgtatgac tctggtaact agagatccct cagaccactc taggcagtgt a-aaaatctct agca
The optimal secondary structure:
The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy
