CESSHIV-1 database

General information on HIV-1 isolate

# 2421

Accession number	L28853
Name	1B5
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	1

L28853 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat ataagcggct gctttttgcc tgtactgggt ctctcttgtt agaccagatc cgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtg--ac tctggtagct agagaaccct cagacccttt tagtcagtgt ggaaaatctc tagca

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy