CESSHIV-1 database

General information on HIV-1 isolate

# 2451

Accession number	L28883
Name	3A7LTR
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	3

L28883 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat ataagcagcc gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagacccc tttagtcagt gtggaaaatc tctagca

Isolates with identical sequences of region:

L28898(#2466) L28912(#2480)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy