CESSHIV-1 database

General information on HIV-1 isolate

# 2456

Accession number	L28888
Name	3B6LTR
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	3

L28888 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttt-gcct gtactgggtc tctctggcta gaccagatct gagcctggga gctctctggc taactaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg tgcgcccgtc tgttgtgtga ctctggtagc tagagatccc tcagatcctt ttagtcagtg cg-aaaacctc tagca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy