CESSHIV-1 database

General information on HIV-1 isolate

# 2471

Accession number	L28903
Name	4A9LTR
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	4

L28903 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctggggagtg acgagccctc agatgctgca tataagcagc cgctttttgc ctgtactggg tctctctggt tagaccagat ctgagcctgg gagctctctg gctaactagg gaacccactg cttaagcctc aataaagctt gccttgagtg ctttaagtag tgtgtgcccg tctgttgtgt gactctggta actagagatc cctcagaccc ctttagtcag tgtggaaaat ctctagca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy