CESSHIV-1 database

General information on HIV-1 isolate

# 1099

Accession number	M13136
Name	CDC451_a
Subtype	B
Country	USA
Sampling year	1984
Patient	451

M13136 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatg-tgcata taagcagctg ctttgtgcct gtactgggtc tctctggtta gaccagatct gagtttggga gctctctggc tagctaggga acccactgct taagcctcaa taaagcttgc cttgagtgct ttaagtagtg tgtgcccgtc tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaaatc tctagca

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy