CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2526
Accession number U73102
Name TW396
SubtypeCRF01_AE
CountryTaiwan
Submitted to NCBI 1996
PatientTW396

U73102 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ttaaccctca gatgctgcat aaaagcagct gcttttcgct tgtactgggt ctctcttgtt agaccaggtc -gagcccggga gctctctggc tagcaaggga -cccactgctt aaagcctcaa taaagcttgc cttgagtgct taaagtggtg tgtgcccatc tgtgtaagga ctctggtaac tagagatccc tcagaccact ctagactgag ta-aaaatctc tagca

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy