CESSHIV-1 database

General information on HIV-1 isolate

# 1126

Accession number	AB078005
Name	ARES2
Subtype	B
Country	USA
Sampling year	1997
Patient	CS2

AB078005 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagcc-tcag atgctgcata taagcagctg ctttttgcct gtactgggtc tctctggtta gaccagatct gagcctggga gctctctggc tagctaggga acccactgct taagcctcaa taaagcttgc cttgagtgct taaagtagtg t

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy