CESSHIV-1 database

General information on HIV-1 isolate

# 271

Accession number	AB097872
Name	mCSW105
Subtype	01A1
Country	Myanmar
Sampling year	1999
Patient	105

AB097872 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gcttttcgct tgtactgggt ctctcttgtt agaccagata -gagtctggga actctctggc tagcgaggga acccactgct taagcctcaa taaagcttgc cttgagtgct taaagtggtg t

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy