CESSHIV-1 database

General information on HIV-1 isolate

# 1345

Accession number	AB191657
Name	99ZMG5
Subtype	C
Country	Zambia
Sampling year	1999

AB191657 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tcaaccctc-g aagctgcata taagcagctg cttatcgctt gtactgggtc tctctaggta gaccagattt gagcccggga gctctctggc tatctaggga acccactgct taagcctcaa taaagcttgc cttgagtgct ctaagtagtg t

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy