CESSHIV-1 database

General information on HIV-1 isolate

# 739

Accession number	AB231898
Name	GHNJ196
Subtype	CRF02_AG
Country	Ghana
Sampling year	2003

AB231898 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagcc gcttctcgcc tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagc-aggga acccactgct taagcctcaa taaagcttgc cttgagtgct ctaagtagtg t

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy