CESSHIV-1 database

General information on HIV-1 isolate

# 905

Accession number	AB253422
Name	p92RW008A16
Subtype	A1
Country	Rwanda
Sampling year	1992
Patient	RW008

AB253422 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ccaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctggtt agaccagatc -gagcctggga gctctctggc tagcaaggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg t

Isolates with identical sequences of region:

AB253421(#904)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy