CESSHIV-1 database

General information on HIV-1 isolate

# 794

Accession number	AB253671
Name	pJPDR3730AE08
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	NH2000-001

AB253671 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat aaaagcagcc gcttttcgct tgtactgggt ctctcttgtt agaccaggtc -gagcccggga gctctctggc tagcagggga acccactgct taagcctcaa taaagcttgc cttgagtgct taaagtggtg t

Isolates with identical sequences of region:

AB253638(#761) AB253645(#768) AB253665(#788) AB253666(#789) AB253667(#790) AB253669(#792) AB253670(#793) AB253672(#795) AB253676(#799) AB253678(#801) AB253679(#802) AB253680(#803)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy