CESSHIV-1 database

General information on HIV-1 isolate

# 860

Accession number	AB253682
Name	pJPDR0492AE11
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	NH19-203

AB253682 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ttaaccctca gatgctgcat aaaagcagcc gcttttcgct tgtactgggt ctctcttgtt agaccaggt-t gagcccggga gctctctggc tagcagggga acccactgct taaagcctca ataaagcttg ccttgagtgc ttaaagtggt gt

Isolates with identical sequences of region:

AB253687(#865) AB253689(#867)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy